CSBIO

Bioinformatics Servers (51 Servers) [Updated to November 30, 2024]

	MMPatho Category: [Genome-wide variants] Description: Interpretable model for missense mutation pathogenic prediction and annotation. Journal: Submitted to JCIM.		ConBoTNet Category: [MHC-II peptide binding] Description: Predicting MHC-II peptide binding affinity with supervised contrastive learning. Journal: Expert Systems with Applications.
	CLSM6A Category: [m6A RNA] Description: Interpreting prediction models to reveal genetic insights of m6A. Journal: Submitted to Briefings in Bioinformatics.		MRM-BERT Category: [RNA Modification Prediction] Description: Predicting RNA modification using biological language model. Journal:IEEE TCBB.
	VPatho Category: [Genome-wide variants] Description: Prediction of pathogenicity and function impact of variants. Journal: Briefings in Bioinformatics.		PScL-2LSAESM Category: [Protein subcellular localization] Description: Predicting protein subcellular localization using two-level and mean sensemble method. Journal:Bioinformatics.
	MSDenseNet Category: [DNA-protein] Description: Prediction of DNA-protein interactions by using multi-scale dense CNN. Journal: Analytical Biochemistry.		PScL-DDCFPred Category: [Protein subcellular localization] Description: Predicting protein subcellular localization using deep learning technology. Journal:Bioinformatics.
	FFMSRes-MutP Category: [Mutations prediction] Description: Prediction of disease-related nsSNPs by integrating deep feature fusion and multi-scale ResNet. Journal: Briefings in Bioinformatics.		RattentFold Category: [Protein foldprediction] Description: Predicting protein foldusing residual network Journal:Analytical Biochemistry.
	AL6mA Category: [DNA N6-methyladenine] Description: Leveraging the attention mechanism to improve the identification of DNA N6-methyladenine sites. Journal: Briefings in Bioinformatics.		MAResNet Category: [TF binding sites prediction] Description: Predicting transcription factor binding sites by combining attention mechanism and residual network Journal:Briefings in Bioinformatics.
	FoldTR Category: [Protein fold recognition] Description: Protein fold recognition recognition using ensemble deep learning. Journal: Briefings in Bioinformatics.		RLSDSPCA Category: [Characteristic Gene Selection] Description: Characteristic Gene Selection and Tumor Classification by RLSDSPCA Journal:Briefings in Bioinformatics.
	MutTMpredictor Category: [Mutations prediction] Description: Disease-related mutations prediction in transmembrane protein. Journal: Computational and Structural Biotechnology Journal.		PScL-HDeep Category: [Protein subcellular localization] Description: Image-based prediction of protein subcellular location in human tissue. Journal:Briefings in Bioinformatics.
	SAResNet Category: [DNA-Protein binding] Description: Predicting DNA-Protein binding. Journal: Briefings in Bioinformatics		VGGfold Category: [Protein Fold Recognition] Description: Visualizing protein fold recognition. Journal:Briefings in Bioinformatics
	DCFCrystal Category: [Protein Crystallization] Description: Predicting Protein Crystallization. Journal: Briefings in Bioinformatics		SSCPred Category: [Protein Contact Map] Description: TargetingATP&amp;amp;amp;ADP binding sitesfrom protein Sequences. Journal: JCIM
	DNAPred Category: [DNA-Binding Sites] Description: Predicting DNA-Binding Journal: JCIM		ATP-ADP Category: [Protein-Ligand Interactions] Description: TargetingATP&amp;amp;amp;ADP binding sitesfrom protein Sequences. Journal: ACPR
	TargetDBP Category: [DNA-Binding Protein] Description: Predicting DNA-Binding proteins. Journal: IEEE TCBB		TargetDBP+ Category: [DNA-Binding Protein] Description: Predicting DNA-Binding proteins. Journal: IEEE TCBB
	SSC-LRR Category: [Gene Expression Data] Description: Cancer Classification on Gene Expression Data. Journal: IEEE TCBB		BGSVM-NUC Category: [Protein-Nucleotide interactions] Description: Targeting protein-nucleotide interactions from protein Journal: CCHT
	TargetM1A Category: [N¹-methyladenosine sites] Description: Identifying m¹A Sites from RNA Sequences. Journal: Paper download(unavailable)		TargetDNA Category: [DNA-protein interactions] Description: Targeting DNA-protein interactions from protein Sequences. Journal: IEEE TCBB
	TargetM6A Category: [N⁶-methyladenosine sites] Description: Identifying m⁶A Sites from RNA Sequences via Position-specific Nucleotide Propensity. Journal:IEEE TNB		M6A-HPCS Category: [N⁶-methyladenosine sites] Description: Targeting m⁶A sites from RNA sequences based on the selection of nucleotide physical-chemical properties. Journal: Analytical Biochemistry
	SSWRF-PPI Category: [Protein-Protein Interaction Sites] Description: Protein-Protein interaction sites prediction by ensembling SVM and sample-weighted random forests. Journal: Neurocomputing		TargetNUCs Category: [Protein-Nucleotide Interaction] Description: Dynamic Query-Driven Sample Rescaling Strategy for targeting protein-nucleotide binding sites. Journal: Neurocomputing
	DC-RF-RUS-PF Category: [Protein-Protein Interaction Sites] Description: Prediction of Protein-Protein Interaction Sites with Machine Learning based Data-Cleaning and Post-Filtering Procedures. Journal: JMBI		TargetFreeze Category:[Antifreeze Protein Prediction] Description: Antifreeze Protein Prediction by Exploring Multiple Sequential Features and Support Vector Machine. Journal: JMBI
	TargetCrys Category: [Protein Crystallization Prediction] Description: Protein Crystallization Prediction by Fusing Multi-View Features with Two-Layered SVM. Journal: Amino Acids		CRF-PPI Category:[Protein-Protein Interactions] Description: A Cascade Random Forests Algorithm for Predicting Protein-Protein Interaction Sites. Journal: IEEE TNB
	OSML Category: [Protein-Nucleotide Interaction] Description: A Query-Driven Dynamic Machine Learning Model for Predicting Protein-Ligand Binding Sites. Journal: IEEE TNB		TargetSOS Category: [Protein-Nucleotide Interaction] Description: A supervised over-sampling (SOS) predictor for targeting protein-nucleotide binding residues Journal: PLoS ONE
	TargetGDrug Category: [Protein-Drug Interaction] Description: Predicting GPCR-Drug Interactions by Random Forest with Drug Association Matrix Based Post-processing Procedure. Journal: CBAC		TargetVita Category: [Protein-Vitamin Interaction] Description: Enhancing Protein-Vitamin Binding Residues Prediction by Multiple Heterogeneous Subspace SVMs Ensemble. Journal: BMC Bioinformatics
	TargetDisulfide Category:[Disulfide Connectivity Prediction] Description: Disulfide Connectivity Prediction Based on Modelled Protein 3D Structural Information and Random Forest Regression. Journal: IEEE TCBB		TargetATP Category: [Protein-ATP Interaction] Description: A Java Web Start Application for Protein-ATP Binding Residue Prediction. Journal: Neurocomputing
	TargetATPsite Category:[Protein-ATP Interaction] Description: A Template-free Method for ATP Binding Sites Prediction with Residue Evolution Image Sparse Representation. Journal: JCC		TargetS Category: [Protein-Nucleotide Interaction] Description: A ligand-specific template-free predictor for targeting protein-ligand binding sites. Journal: IEEE TCBB
	SONPNN Category: [Helices Prediction] Description: An Efficient Non-Parametric Model for Predicting Transmembrane Helices. Journal:Amino Acids		MPSP Category: [Subcellular Localization Prediction] Description: Membrane Protein Subcellular Localization Prediction by Parallel Fusion of Multi-View Features. Journal:IEEE TNB
	COMSPA Category: [Protein Structural Classes Prediction] Description:Predicting Protein Structural Classes From Primary Sequence by Learning Multi-View Features in Complex Space. Journal:Amino Acids		SOMRuler Category: [Helices Prediction] Description: A Novel Interpretable Transmembrane Helices Predictor. Journal: IEEE TNB
	ULDNA Category: [DNA-Binding Sites] Description:Predicting DNA-Binding. Journal:Submitted to Briefings in Bioinformatics

[Back] [Home]

Author: Jiashun Wu, Editor: Dong-Jun Yu, Reviewer: Haofeng Zhang