| MMPatho Category: [Genome-wide variants] Description: Interpretable model for missense mutation pathogenic prediction and annotation. Journal: Submitted to JCIM.
| | MRM-BERT (Backup) Category: [RNA Modification Prediction] Description: Predicting RNA modification using biological language model. Journal:IEEE TCBB. |
| CLSM6A Category: [m6A RNA] Description: Interpreting prediction models to reveal genetic insights of m6A. Journal: Submitted to Briefings in Bioinformatics.
| | MRM-BERT Category: [RNA Modification Prediction] Description: Predicting RNA modification using biological language model. Journal:IEEE TCBB. |
| VPatho Category: [Genome-wide variants] Description: Prediction of pathogenicity and function impact of variants. Journal: Briefings in Bioinformatics.
| | PScL-2LSAESM Category: [Protein subcellular localization] Description: Predicting protein subcellular localization using two-level and mean sensemble method. Journal:Bioinformatics. |
| MSDenseNet Category: [DNA-protein] Description: Prediction of DNA-protein interactions by using multi-scale dense CNN. Journal: Analytical Biochemistry.
| | PScL-DDCFPred Category: [Protein subcellular localization] Description: Predicting protein subcellular localization using deep learning technology. Journal:Bioinformatics. |
| FFMSRes-MutP Category: [Mutations prediction] Description: Prediction of disease-related nsSNPs by integrating deep feature fusion and multi-scale ResNet. Journal: Briefings in Bioinformatics.
| | RattentFold Category: [Protein foldprediction] Description: Predicting protein foldusing residual network Journal:Analytical Biochemistry. |
| AL6mA Category: [DNA N6-methyladenine] Description: Leveraging the attention mechanism to improve the identification of DNA N6-methyladenine sites. Journal: Briefings in Bioinformatics.
| | MAResNet Category: [TF binding sites prediction] Description: Predicting transcription factor binding sites by combining attention mechanism and residual network Journal:Briefings in Bioinformatics. |
| FoldTR Category: [Protein fold recognition] Description: Protein fold recognition recognition using ensemble deep learning. Journal: Briefings in Bioinformatics. | | RLSDSPCA Category: [Characteristic Gene Selection] Description: Characteristic Gene Selection and Tumor Classification by RLSDSPCA Journal:Briefings in Bioinformatics. |
| MutTMpredictor Category: [Mutations prediction] Description: Disease-related mutations prediction in transmembrane protein. Journal: Computational and Structural Biotechnology Journal. | | PScL-HDeep Category: [Protein subcellular localization] Description: Image-based prediction of protein subcellular location in human tissue. Journal:Briefings in Bioinformatics. |
| SAResNet Category: [DNA-Protein binding] Description: Predicting DNA-Protein binding. Journal: Briefings in Bioinformatics | | VGGfold Category: [Protein Fold Recognition] Description: Visualizing protein fold recognition. Journal:Briefings in Bioinformatics |
| DCFCrystal Category: [Protein Crystallization] Description: Predicting Protein Crystallization. Journal: Briefings in Bioinformatics | | SSCPred Category: [Protein Contact Map] Description: TargetingATP&ADP binding sitesfrom protein Sequences. Journal: JCIM |
| DNAPred Category: [DNA-Binding Sites] Description: Predicting DNA-Binding Journal: JCIM | | ATP-ADP Category: [Protein-Ligand Interactions] Description: TargetingATP&ADP binding sitesfrom protein Sequences. Journal: ACPR |
| TargetDBP Category: [DNA-Binding Protein] Description: Predicting DNA-Binding proteins. Journal: IEEE TCBB | | TargetDBP+ Category: [DNA-Binding Protein] Description: Predicting DNA-Binding proteins. Journal: IEEE TCBB |
| SSC-LRR Category: [Gene Expression Data] Description: Cancer Classification on Gene Expression Data. Journal: IEEE TCBB | | BGSVM-NUC Category: [Protein-Nucleotide interactions] Description: Targeting protein-nucleotide interactions from protein Journal: CCHT |
| TargetM1A Category: [N1-methyladenosine sites] Description: Identifying m1A Sites from RNA Sequences. Journal: Paper download(unavailable) | | TargetDNA Category: [DNA-protein interactions] Description: Targeting DNA-protein interactions from protein Sequences. Journal: IEEE TCBB |
| TargetM6A Category: [N6-methyladenosine sites] Description: Identifying m6A Sites from RNA Sequences via Position-specific Nucleotide Propensity. Journal:IEEE TNB | | M6A-HPCS Category: [N6-methyladenosine sites] Description: Targeting m6A sites from RNA sequences based on the selection of nucleotide physical-chemical properties. Journal: Analytical Biochemistry |
| SSWRF-PPI Category: [Protein-Protein Interaction Sites] Description: Protein-Protein interaction sites prediction by ensembling SVM and sample-weighted random forests. Journal: Neurocomputing | | TargetNUCs Category: [Protein-Nucleotide Interaction] Description: Dynamic Query-Driven Sample Rescaling Strategy for targeting protein-nucleotide binding sites. Journal: Neurocomputing |
| DC-RF-RUS-PF Category: [Protein-Protein Interaction Sites] Description: Prediction of Protein-Protein Interaction Sites with Machine Learning based Data-Cleaning and Post-Filtering Procedures. Journal: JMBI | | TargetFreeze Category:[Antifreeze Protein Prediction] Description: Antifreeze Protein Prediction by Exploring Multiple Sequential Features and Support Vector Machine. Journal: JMBI |
| TargetCrys Category: [Protein Crystallization Prediction] Description: Protein Crystallization Prediction by Fusing Multi-View Features with Two-Layered SVM. Journal: Amino Acids | | CRF-PPI Category:[Protein-Protein Interactions] Description: A Cascade Random Forests Algorithm for Predicting Protein-Protein Interaction Sites. Journal: IEEE TNB |
| OSML Category: [Protein-Nucleotide Interaction] Description: A Query-Driven Dynamic Machine Learning Model for Predicting Protein-Ligand Binding Sites. Journal: IEEE TNB | | TargetSOS Category: [Protein-Nucleotide Interaction] Description: A supervised over-sampling (SOS) predictor for targeting protein-nucleotide binding residues Journal: PLoS ONE |
| TargetGDrug Category: [Protein-Drug Interaction] Description: Predicting GPCR-Drug Interactions by Random Forest with Drug Association Matrix Based Post-processing Procedure. Journal: CBAC | | TargetVita Category: [Protein-Vitamin Interaction] Description: Enhancing Protein-Vitamin Binding Residues Prediction by Multiple Heterogeneous Subspace SVMs Ensemble. Journal: BMC Bioinformatics |
| TargetDisulfide Category:[Disulfide Connectivity Prediction] Description: Disulfide Connectivity Prediction Based on Modelled Protein 3D Structural Information and Random Forest Regression. Journal: IEEE TCBB | | TargetATP Category: [Protein-ATP Interaction] Description: A Java Web Start Application for Protein-ATP Binding Residue Prediction. Journal: Neurocomputing |
| TargetATPsite Category:[Protein-ATP Interaction] Description: A Template-free Method for ATP Binding Sites Prediction with Residue Evolution Image Sparse Representation. Journal: JCC | | TargetS Category: [Protein-Nucleotide Interaction] Description: A ligand-specific template-free predictor for targeting protein-ligand binding sites. Journal: IEEE TCBB |
| SONPNN Category: [Helices Prediction] Description: An Efficient Non-Parametric Model for Predicting Transmembrane Helices. Journal:Amino Acids | | MPSP Category: [Subcellular Localization Prediction] Description: Membrane Protein Subcellular Localization Prediction by Parallel Fusion of Multi-View Features. Journal:IEEE TNB |
| COMSPA Category: [Protein Structural Classes Prediction] Description:Predicting Protein Structural Classes From Primary Sequence by Learning Multi-View Features in Complex Space. Journal:Amino Acids | | SOMRuler Category: [Helices Prediction] Description: A Novel Interpretable Transmembrane Helices Predictor. Journal: IEEE TNB |
| ULDNA Category: [DNA-Binding Sites] Description:Predicting DNA-Binding. Journal:Submitted to Briefings in Bioinformatics |
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