Bioinformatics Servers ( 40 Servers)


FFMSRes-MutP 
Category:
[Mutations prediction]
Description
:
Prediction of disease-related nsSNPs by integrating deep feature fusion and multi-scale ResNet.
Journal: Submitted.

RattentFold
Category
:
[Protein fold prediction]
Description
: Predicting protein fold using residual network
Journal: Submitted.

AL6mA 
Category:
[DNA N6-methyladenine]
Description
:
Leveraging the attention mechanism to improve the identification of DNA N6-methyladenine sites.
Journal: Briefings in Bioinformatics.

MAResNet
Category
:
[TF binding sites prediction]
Description
: Predicting transcription factor binding sites by combining attention mechanism and residual network
Journal: Submitted.

FoldTR 
Category: [Protein fold recognition
]
Description
: Protein fold recognition recognition using ensemble deep learning.
Journal: Briefings in Bioinformatics.

RLSDSPCA 
Category: [Characteristic Gene Selection]
Description
: Characteristic Gene Selection and Tumor Classification by RLSDSPCA
JournalBriefings in Bioinformatics.

MutTMpredictor
Category: [Mutations prediction
]
Description
: Disease-related mutations prediction in transmembrane protein.
Journal: Submitted.

PScL-HDeep 
Category: [Protein subcellular localization]
Description
: Image-based prediction of protein subcellular location in human tissue.
JournalBriefings in Bioinformatics.

SAResNet 
Category: [DNA-
Protein binding]
Description
: Predicting DNA-Protein binding.
Journal: Briefings in Bioinformatics

VGGfold 
Category: [Protein Fold Recognition]
Description
: Visualizing protein fold recognition.
JournalBriefings in Bioinformatics

DCFCrystal 
Category: [
Protein Crystallization]
Description
: Predicting Protein Crystallization.
Journal: Briefings in Bioinformatics

SSCPred 
Category: [Protein Contact Map]
Description
: Targeting ATP&ADP binding sites from protein Sequences.
Journal: JCIM

DNAPred 
Category: [DNA-Binding Sites]
Description
: Predicting DNA-Binding
Journal: JCIM

ATP-ADP 
Category: [Protein-Ligand Interactions]
Description
: Targeting ATP&ADP binding sites from protein Sequences.
Journal: ACPR

TargetDBP 
Category: [DNA-Binding Protein]
Description
: Predicting DNA-Binding proteins.
Journal: IEEE TCBB

TargetDBP+ 
Category: [
DNA-Binding Protein]
Description
:
Predicting DNA-Binding proteins.
Journal:
IEEE TCBB

SSC-LRR 
Category: [Gene Expression Data]
Description
: Cancer Classification on Gene Expression Data.
Journal: IEEE TCBB

BGSVM-NUC 
Category: [Protein-Nucleotide interactions]
Description
: Targeting protein-nucleotide interactions from protein
Journal: CCHT

TargetM1A 
Category: [N1-methyladenosine sites]
Description
: Identifying m1A Sites from RNA Sequences.
Journal:
Paper download
 (unavailable)

TargetDNA 
Category: [DNA-protein interactions]
Description
: Targeting DNA-protein interactions from protein Sequences.
Journal: IEEE TCBB

TargetM6A 
Category: [N6-methyladenosine sites]
Description
: Identifying m6A Sites from RNA Sequences via Position-specific Nucleotide Propensity.
Journal: IEEE TNB

M6A-HPCS
Category: [N6-methyladenosine sites]
Description
: Targeting m6A sites from RNA sequences based on the selection of nucleotide physical-chemical properties.
Journal: Analytical Biochemistry

SSWRF-PPI
Category: [Protein-Protein Interaction Sites] 
Description: Protein-Protein interaction sites prediction by ensembling SVM and sample-weighted random forests.
Journal: Neurocomputing

TargetNUCs
Category: [Protein-Nucleotide Interaction] 
Description: Dynamic Query-Driven Sample Rescaling Strategy for targeting protein-nucleotide binding sites.
Journal
: Neurocomputing

DC-RF-RUS-PF
Category: [Protein-Protein Interaction Sites]
Description
: Prediction of Protein-Protein Interaction Sites with Machine Learning based Data-Cleaning and Post-Filtering Procedures.
Journal
JMBI

TargetFreeze
Category: [Antifreeze Protein Prediction] 
Description: Antifreeze Protein Prediction by Exploring Multiple Sequential Features and Support Vector Machine.
Journal: JMBI

TargetCrys

Category: [Protein Crystallization Prediction]
Description: Protein Crystallization Prediction by Fusing Multi-View Features with Two-Layered SVM.
Journal: Amino Acids

CRF-PPI
Category: [Protein-Protein Interactions] 
Description: A Cascade Random Forests Algorithm for Predicting Protein-Protein Interaction Sites.
Journal: IEEE TNB

OSML
Category: [Protein-Nucleotide Interaction]
Description: A Query-Driven Dynamic Machine Learning Model for Predicting Protein-Ligand Binding Sites.
Journal: IEEE TNB

TargetSOS
Category: [Protein-Nucleotide Interaction]
Description: A supervised over-sampling (SOS) predictor for targeting protein-nucleotide binding residues
Journal: PLoS ONE

TargetGDrug
Category: [Protein-Drug Interaction]
Description: Predicting GPCR-Drug Interactions by Random Forest with Drug Association Matrix Based Post-processing Procedure.
Journal: CBAC

TargetVita
Category: [Protein-Vitamin Interaction]
Description: Enhancing Protein-Vitamin Binding Residues Prediction by Multiple Heterogeneous Subspace SVMs Ensemble.
Journal:  BMC Bioinformatics

TargetDisulfide
Category:[Disulfide Connectivity Prediction]
Description: Disulfide Connectivity Prediction Based on Modelled Protein 3D Structural Information and Random Forest Regression.
Journal: IEEE TCBB

TargetATP
Category: [Protein-ATP Interaction]  
Description: A Java Web Start Application for Protein-ATP Binding Residue Prediction.
JournalNeurocomputing

TargetATPsite
Category: [Protein-ATP Interaction]
Description: A Template-free Method for ATP Binding Sites Prediction with Residue Evolution Image Sparse Representation.
Journal: JCC

TargetS
Category[Protein-Nucleotide Interaction]
Description: A ligand-specific template-free predictor for targeting protein-ligand binding sites.
Journal: IEEE TCBB
SONPNN
Category
: [Helices Prediction]
Description: An Efficient Non-Parametric Model for Predicting Transmembrane Helices.
Journal: Amino Acids
MPSP
Category
: [Subcellular Localization Prediction]
Description: Membrane Protein Subcellular Localization Prediction by Parallel Fusion of Multi-View Features.
Journal: IEEE TNB

COMSPA
Category: [Protein Structural Classes Prediction]
Description:Predicting Protein Structural Classes From Primary Sequence by Learning Multi-View Features in Complex Space.
JournalAmino Acids

SOMRuler
Category
: [Helices Prediction]
Description: A Novel Interpretable Transmembrane Helices Predictor.
JournalIEEE TNB

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